Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W _ __call__() (mici.solvers.FixedPointSolver method) (mici.solvers.ProjectionSolver method) A AdaptationError AdaptationStatisticFunction (in module mici.types) Adapter (class in mici.adapters) AdapterState (in module mici.types) add_note() (mici.errors.AdaptationError method) (mici.errors.ConvergenceError method) (mici.errors.Error method) (mici.errors.HamiltonianDivergenceError method) (mici.errors.IntegratorError method) (mici.errors.LinAlgError method) (mici.errors.NonReversibleStepError method) (mici.errors.ReadOnlyStateError method) args (mici.errors.AdaptationError attribute) (mici.errors.ConvergenceError attribute) (mici.errors.Error attribute) (mici.errors.HamiltonianDivergenceError attribute) (mici.errors.IntegratorError attribute) (mici.errors.LinAlgError attribute) (mici.errors.NonReversibleStepError attribute) (mici.errors.ReadOnlyStateError attribute) arithmetic_mean_log_step_size_reducer() (in module mici.adapters) array (mici.matrices.BlockColumnMatrix property) (mici.matrices.BlockMatrix property) (mici.matrices.BlockRowMatrix property) (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseRectangularMatrix property) (mici.matrices.DenseSquareMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.ExplicitArrayMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.ImplicitArrayMatrix property) (mici.matrices.InverseLUFactoredSquareMatrix property) (mici.matrices.InverseTriangularMatrix property) (mici.matrices.InvertibleMatrix property) (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.Matrix property) (mici.matrices.MatrixProduct property) (mici.matrices.OrthogonalMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.ScaledOrthogonalMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SquareMatrix property) (mici.matrices.SquareMatrixProduct property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) (mici.matrices.TriangularMatrix property) ArrayFunction (in module mici.types) autodiff_fallback() (in module mici.autodiff) AutodiffBackend (class in mici.autodiff) B bar_color (mici.progressbars.SequenceProgressBar property) BCSSFourStageIntegrator (class in mici.integrators) BCSSThreeStageIntegrator (class in mici.integrators) BCSSTwoStageIntegrator (class in mici.integrators) BlockColumnMatrix (class in mici.matrices) BlockMatrix (class in mici.matrices) BlockRowMatrix (class in mici.matrices) blocks (mici.matrices.BlockColumnMatrix property) (mici.matrices.BlockMatrix property) (mici.matrices.BlockRowMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SymmetricBlockDiagonalMatrix property) C cache_in_state() (in module mici.states) cache_in_state_with_aux() (in module mici.states) capacitance_matrix (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) ChainStage (class in mici.stagers) ChainState (class in mici.states) CholeskyFactoredRiemannianMetricSystem (class in mici.systems) completed_labels (mici.progressbars.LabelledSequenceProgressBar property) constr() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) ConstrainedEuclideanMetricSystem (class in mici.systems) ConstrainedLeapfrogIntegrator (class in mici.integrators) ConstrainedTractableFlowSystem (class in mici.systems) construct_pymc_model_functions() (in module mici.interop) construct_stan_model_functions() (in module mici.interop) ConvergenceError convert_to_inference_data() (in module mici.interop) copy() (mici.states.ChainState method) CorrelatedMomentumTransition (class in mici.transitions) counter (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.SequenceProgressBar property) current_label (mici.progressbars.LabelledSequenceProgressBar property) CURSOR_DOWN (mici.progressbars.FileDisplay attribute) CURSOR_UP (mici.progressbars.FileDisplay attribute) D default_adapt_stat_func() (in module mici.adapters) DenseConstrainedEuclideanMetricSystem (class in mici.systems) DenseDefiniteMatrix (class in mici.matrices) DensePositiveDefiniteMatrix (class in mici.matrices) DensePositiveDefiniteProductMatrix (class in mici.matrices) DenseRectangularMatrix (class in mici.matrices) DenseRiemannianMetricSystem (class in mici.systems) DenseSquareMatrix (class in mici.matrices) DenseSymmetricMatrix (class in mici.matrices) description (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.SequenceProgressBar property) dh1_dpos() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) dh2_dmom() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) dh2_dpos() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) dh2_flow_dmom() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) dh_dmom() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) dh_dpos() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) diagonal (mici.matrices.BlockColumnMatrix property) (mici.matrices.BlockMatrix property) (mici.matrices.BlockRowMatrix property) (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseRectangularMatrix property) (mici.matrices.DenseSquareMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.ExplicitArrayMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.ImplicitArrayMatrix property) (mici.matrices.InverseLUFactoredSquareMatrix property) (mici.matrices.InverseTriangularMatrix property) (mici.matrices.InvertibleMatrix property) (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.Matrix property) (mici.matrices.MatrixProduct property) (mici.matrices.OrthogonalMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.ScaledOrthogonalMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SquareMatrix property) (mici.matrices.SquareMatrixProduct property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) (mici.matrices.TriangularMatrix property) DiagonalMatrix (class in mici.matrices) DiagonalRiemannianMetricSystem (class in mici.systems) DifferentiableMatrix (class in mici.matrices) DualAveragingStepSizeAdapter (class in mici.adapters) DummyProgressBar (class in mici.progressbars) DynamicIntegrationTransition (class in mici.transitions) DynamicMultinomialHMC (class in mici.samplers) DynamicSliceHMC (class in mici.samplers) E EigendecomposedPositiveDefiniteMatrix (class in mici.matrices) EigendecomposedSymmetricMatrix (class in mici.matrices) eigval (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) eigvec (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) elapsed_time (mici.progressbars.SequenceProgressBar property) empty_blocks (mici.progressbars.SequenceProgressBar property) Error est_remaining_time (mici.progressbars.SequenceProgressBar property) euclidean_no_u_turn_criterion() (in module mici.transitions) euclidean_norm() (in module mici.solvers) EuclideanMetricSystem (class in mici.systems) ExplicitArrayMatrix (class in mici.matrices) F factor (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) FileDisplay (class in mici.progressbars) filled_blocks (mici.progressbars.SequenceProgressBar property) finalize() (mici.adapters.Adapter method) (mici.adapters.DualAveragingStepSizeAdapter method) (mici.adapters.OnlineCovarianceMetricAdapter method) (mici.adapters.OnlineVarianceMetricAdapter method) FixedPointSolver (class in mici.solvers) G GaussianDenseConstrainedEuclideanMetricSystem (class in mici.systems) GaussianEuclideanMetricSystem (class in mici.systems) geometric_mean_log_step_size_reducer() (in module mici.adapters) get_stan_model_unconstrained_param_dim() (in module mici.interop) GLYPHS (mici.progressbars.SequenceProgressBar attribute) grad_and_value() (in module mici.autodiff.autograd_wrapper) (in module mici.autodiff.jax_wrapper) (in module mici.autodiff.symnum_wrapper) grad_log_abs_det (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) grad_log_det_sqrt_gram() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) grad_neg_log_dens() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) grad_quadratic_form_inv() (mici.matrices.DenseDefiniteMatrix method) (mici.matrices.DensePositiveDefiniteMatrix method) (mici.matrices.DensePositiveDefiniteProductMatrix method) (mici.matrices.DiagonalMatrix method) (mici.matrices.DifferentiableMatrix method) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix method) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix method) (mici.matrices.PositiveDiagonalMatrix method) (mici.matrices.PositiveScaledIdentityMatrix method) (mici.matrices.ScaledIdentityMatrix method) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix method) (mici.matrices.TriangularFactoredDefiniteMatrix method) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix method) grad_softabs() (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix method) GradientFunction (in module mici.types) gram() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) H h() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) h1() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) h1_flow() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) h2() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) h2_flow() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.TractableFlowSystem method) HamiltonianDivergenceError HamiltonianMonteCarlo (class in mici.samplers) hash_array() (in module mici.utils) hess_neg_log_dens() (mici.systems.SoftAbsRiemannianMetricSystem method) hessian_grad_and_value() (in module mici.autodiff.autograd_wrapper) (in module mici.autodiff.jax_wrapper) (in module mici.autodiff.symnum_wrapper) HessianFunction (in module mici.types) HMCSampleChainsOutputs (class in mici.samplers) I IdentityMatrix (class in mici.matrices) ImplicitArrayMatrix (class in mici.matrices) ImplicitLeapfrogIntegrator (class in mici.integrators) ImplicitMidpointIntegrator (class in mici.integrators) IndependentMomentumTransition (class in mici.transitions) initialize() (mici.adapters.Adapter method) (mici.adapters.DualAveragingStepSizeAdapter method) (mici.adapters.OnlineCovarianceMetricAdapter method) (mici.adapters.OnlineVarianceMetricAdapter method) IntegrationTransition (class in mici.transitions) Integrator (class in mici.integrators) IntegratorError inv (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseSquareMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.InverseLUFactoredSquareMatrix property) (mici.matrices.InverseTriangularMatrix property) (mici.matrices.InvertibleMatrix property) (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.OrthogonalMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.ScaledOrthogonalMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) (mici.matrices.TriangularMatrix property) inv_gram() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) InverseLUFactoredSquareMatrix (class in mici.matrices) InverseTriangularMatrix (class in mici.matrices) InvertibleMatrix (class in mici.matrices) InvertibleMatrixProduct (class in mici.matrices) is_fast (mici.adapters.Adapter property) (mici.adapters.DualAveragingStepSizeAdapter attribute) (mici.adapters.OnlineCovarianceMetricAdapter attribute) (mici.adapters.OnlineVarianceMetricAdapter attribute) iter_rate (mici.progressbars.SequenceProgressBar property) J jacob_constr() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) jacob_constr_inner_product() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) jacobian_and_value() (in module mici.autodiff.autograd_wrapper) (in module mici.autodiff.jax_wrapper) (in module mici.autodiff.symnum_wrapper) JacobianFunction (in module mici.types) jit_and_return_numpy_arrays() (in module mici.autodiff.jax_wrapper) L LabelledSequenceProgressBar (class in mici.progressbars) LeapfrogIntegrator (class in mici.integrators) LinAlgError log1m_exp() (in module mici.utils) log1p_exp() (in module mici.utils) log_abs_det (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseSquareMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.InverseLUFactoredSquareMatrix property) (mici.matrices.InverseTriangularMatrix property) (mici.matrices.InvertibleMatrix property) (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.OrthogonalMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.ScaledOrthogonalMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SquareMatrix property) (mici.matrices.SquareMatrixProduct property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) (mici.matrices.TriangularMatrix property) log_det_sqrt_gram() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) log_diff_exp() (in module mici.utils) log_sum_exp() (in module mici.utils) LogRepFloat (class in mici.utils) lower (mici.matrices.InverseTriangularMatrix property) (mici.matrices.TriangularMatrix property) lu_and_piv (mici.matrices.DenseSquareMatrix property) M MarkovChainMonteCarloMethod (class in mici.samplers) matrices (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.MatrixProduct property) (mici.matrices.SquareMatrixProduct property) Matrix (class in mici.matrices) MatrixHessianProduct (in module mici.types) MatrixHessianProductFunction (in module mici.types) MatrixLike (in module mici.types) MatrixProduct (class in mici.matrices) MatrixTressianProduct (in module mici.types) MatrixTressianProductFunction (in module mici.types) max_delta_h (mici.samplers.DynamicMultinomialHMC property) (mici.samplers.DynamicSliceHMC property) max_tree_depth (mici.samplers.DynamicMultinomialHMC property) (mici.samplers.DynamicSliceHMC property) maximum_norm() (in module mici.solvers) MCMCSampleChainsOutputs (class in mici.samplers) metric() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) metric_func() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) MetricLike (in module mici.types) MetropolisIntegrationTransition (class in mici.transitions) MetropolisRandomIntegrationTransition (class in mici.transitions) MetropolisStaticIntegrationTransition (class in mici.transitions) mhp_constr() (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) mhp_jacobian_and_value() (in module mici.autodiff.autograd_wrapper) (in module mici.autodiff.jax_wrapper) (in module mici.autodiff.symnum_wrapper) mici module mici.adapters module mici.autodiff module mici.autodiff.autograd_wrapper module mici.autodiff.jax_wrapper module mici.autodiff.symnum_wrapper module mici.errors module mici.integrators module mici.interop module mici.matrices module mici.progressbars module mici.samplers module mici.solvers module mici.stagers module mici.states module mici.systems module mici.transitions module mici.types module mici.utils module min_log_step_size_reducer() (in module mici.adapters) module mici mici.adapters mici.autodiff mici.autodiff.autograd_wrapper mici.autodiff.jax_wrapper mici.autodiff.symnum_wrapper mici.errors mici.integrators mici.interop mici.matrices mici.progressbars mici.samplers mici.solvers mici.stagers mici.states mici.systems mici.transitions mici.types mici.utils MomentumTransition (class in mici.transitions) mtp_hessian_grad_and_value() (in module mici.autodiff.autograd_wrapper) (in module mici.autodiff.jax_wrapper) (in module mici.autodiff.symnum_wrapper) mtp_neg_log_dens() (mici.systems.SoftAbsRiemannianMetricSystem method) MultinomialDynamicIntegrationTransition (class in mici.transitions) N n_block_empty (mici.progressbars.SequenceProgressBar property) n_block_filled (mici.progressbars.SequenceProgressBar property) n_iter (mici.progressbars.DummyProgressBar property) (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.ProgressBar property) (mici.progressbars.SequenceProgressBar property) n_step (mici.samplers.StaticMetropolisHMC property) n_step_range (mici.samplers.RandomMetropolisHMC property) neg_log_dens() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) NonReversibleStepError O OnlineCovarianceMetricAdapter (class in mici.adapters) OnlineVarianceMetricAdapter (class in mici.adapters) OrthogonalMatrix (class in mici.matrices) P partial_block (mici.progressbars.SequenceProgressBar property) perc_complete (mici.progressbars.SequenceProgressBar property) PositiveDefiniteBlockDiagonalMatrix (class in mici.matrices) PositiveDefiniteLowRankUpdateMatrix (class in mici.matrices) PositiveDefiniteMatrix (class in mici.matrices) PositiveDiagonalMatrix (class in mici.matrices) PositiveScaledIdentityMatrix (class in mici.matrices) postfix (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.SequenceProgressBar property) prefix (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.SequenceProgressBar property) progress_bar (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.SequenceProgressBar property) ProgressBar (class in mici.progressbars) project_onto_cotangent_space() (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) ProjectionSolver (class in mici.solvers) prop_complete (mici.progressbars.SequenceProgressBar property) prop_partial_block (mici.progressbars.SequenceProgressBar property) PyTree (in module mici.types) R RandomMetropolisHMC (class in mici.samplers) ReadOnlyStateError ReducerFunction (in module mici.types) refresh() (mici.progressbars.LabelledSequenceProgressBar method) (mici.progressbars.SequenceProgressBar method) reset() (mici.progressbars.LabelledSequenceProgressBar method) (mici.progressbars.SequenceProgressBar method) return_numpy_arrays() (in module mici.autodiff.jax_wrapper) riemannian_no_u_turn_criterion() (in module mici.transitions) RiemannianMetricSystem (class in mici.systems) rng (mici.samplers.DynamicMultinomialHMC property) (mici.samplers.DynamicSliceHMC property) (mici.samplers.HamiltonianMonteCarlo property) (mici.samplers.MarkovChainMonteCarloMethod property) (mici.samplers.RandomMetropolisHMC property) (mici.samplers.StaticMetropolisHMC property) S sample() (mici.transitions.CorrelatedMomentumTransition method) (mici.transitions.DynamicIntegrationTransition method) (mici.transitions.IndependentMomentumTransition method) (mici.transitions.IntegrationTransition method) (mici.transitions.MetropolisIntegrationTransition method) (mici.transitions.MetropolisRandomIntegrationTransition method) (mici.transitions.MetropolisStaticIntegrationTransition method) (mici.transitions.MomentumTransition method) (mici.transitions.MultinomialDynamicIntegrationTransition method) (mici.transitions.SliceDynamicIntegrationTransition method) (mici.transitions.Transition method) sample_chains() (mici.samplers.DynamicMultinomialHMC method) (mici.samplers.DynamicSliceHMC method) (mici.samplers.HamiltonianMonteCarlo method) (mici.samplers.MarkovChainMonteCarloMethod method) (mici.samplers.RandomMetropolisHMC method) (mici.samplers.StaticMetropolisHMC method) sample_momentum() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.ConstrainedEuclideanMetricSystem method) (mici.systems.ConstrainedTractableFlowSystem method) (mici.systems.DenseConstrainedEuclideanMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.EuclideanMetricSystem method) (mici.systems.GaussianDenseConstrainedEuclideanMetricSystem method) (mici.systems.GaussianEuclideanMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) (mici.systems.System method) (mici.systems.TractableFlowSystem method) sample_pymc_model() (in module mici.interop) sample_stan_model() (in module mici.interop) scalar (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) ScalarFunction (in module mici.types) ScalarLike (in module mici.types) ScalarRiemannianMetricSystem (class in mici.systems) ScaledIdentityMatrix (class in mici.matrices) ScaledOrthogonalMatrix (class in mici.matrices) sequence (mici.progressbars.DummyProgressBar property) (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.ProgressBar property) (mici.progressbars.SequenceProgressBar property) SequenceProgressBar (class in mici.progressbars) shape (mici.matrices.BlockColumnMatrix property) (mici.matrices.BlockMatrix property) (mici.matrices.BlockRowMatrix property) (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseRectangularMatrix property) (mici.matrices.DenseSquareMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.ExplicitArrayMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.ImplicitArrayMatrix property) (mici.matrices.InverseLUFactoredSquareMatrix property) (mici.matrices.InverseTriangularMatrix property) (mici.matrices.InvertibleMatrix property) (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.Matrix property) (mici.matrices.MatrixProduct property) (mici.matrices.OrthogonalMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.ScaledOrthogonalMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SquareMatrix property) (mici.matrices.SquareMatrixProduct property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) (mici.matrices.TriangularMatrix property) sign (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) SliceDynamicIntegrationTransition (class in mici.transitions) softabs() (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix method) SoftAbsRegularizedPositiveDefiniteMatrix (class in mici.matrices) SoftAbsRiemannianMetricSystem (class in mici.systems) solve_fixed_point_direct() (in module mici.solvers) solve_fixed_point_steffensen() (in module mici.solvers) solve_projection_onto_manifold_newton() (in module mici.solvers) solve_projection_onto_manifold_newton_with_line_search() (in module mici.solvers) solve_projection_onto_manifold_quasi_newton() (in module mici.solvers) sqrt (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) SquareBlockDiagonalMatrix (class in mici.matrices) SquareLowRankUpdateMatrix (class in mici.matrices) SquareMatrix (class in mici.matrices) SquareMatrixProduct (class in mici.matrices) Stager (class in mici.stagers) stages() (mici.stagers.Stager method) (mici.stagers.WarmUpStager method) (mici.stagers.WindowedWarmUpStager method) state_variables (mici.transitions.CorrelatedMomentumTransition property) (mici.transitions.DynamicIntegrationTransition property) (mici.transitions.IndependentMomentumTransition property) (mici.transitions.IntegrationTransition property) (mici.transitions.MetropolisIntegrationTransition property) (mici.transitions.MetropolisRandomIntegrationTransition property) (mici.transitions.MetropolisStaticIntegrationTransition property) (mici.transitions.MomentumTransition property) (mici.transitions.MultinomialDynamicIntegrationTransition property) (mici.transitions.SliceDynamicIntegrationTransition property) (mici.transitions.Transition property) StaticMetropolisHMC (class in mici.samplers) statistic_types (mici.transitions.CorrelatedMomentumTransition property) (mici.transitions.DynamicIntegrationTransition property) (mici.transitions.IndependentMomentumTransition property) (mici.transitions.IntegrationTransition property) (mici.transitions.MetropolisIntegrationTransition property) (mici.transitions.MetropolisRandomIntegrationTransition property) (mici.transitions.MetropolisStaticIntegrationTransition property) (mici.transitions.MomentumTransition property) (mici.transitions.MultinomialDynamicIntegrationTransition property) (mici.transitions.SliceDynamicIntegrationTransition property) (mici.transitions.Transition property) stats (mici.progressbars.LabelledSequenceProgressBar property) (mici.progressbars.SequenceProgressBar property) step() (mici.integrators.BCSSFourStageIntegrator method) (mici.integrators.BCSSThreeStageIntegrator method) (mici.integrators.BCSSTwoStageIntegrator method) (mici.integrators.ConstrainedLeapfrogIntegrator method) (mici.integrators.ImplicitLeapfrogIntegrator method) (mici.integrators.ImplicitMidpointIntegrator method) (mici.integrators.Integrator method) (mici.integrators.LeapfrogIntegrator method) (mici.integrators.SymmetricCompositionIntegrator method) (mici.integrators.TractableFlowIntegrator method) SymmetricBlockDiagonalMatrix (class in mici.matrices) SymmetricCompositionIntegrator (class in mici.integrators) SymmetricLowRankUpdateMatrix (class in mici.matrices) SymmetricMatrix (class in mici.matrices) System (class in mici.systems) system (mici.samplers.DynamicMultinomialHMC property) (mici.samplers.DynamicSliceHMC property) (mici.samplers.HamiltonianMonteCarlo property) (mici.samplers.RandomMetropolisHMC property) (mici.samplers.StaticMetropolisHMC property) SystemStateMethod (in module mici.types) SystemStateWithAuxMethod (in module mici.types) T T (mici.matrices.BlockColumnMatrix property) (mici.matrices.BlockMatrix property) (mici.matrices.BlockRowMatrix property) (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseRectangularMatrix property) (mici.matrices.DenseSquareMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.ExplicitArrayMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.ImplicitArrayMatrix property) (mici.matrices.InverseLUFactoredSquareMatrix property) (mici.matrices.InverseTriangularMatrix property) (mici.matrices.InvertibleMatrix property) (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.Matrix property) (mici.matrices.MatrixProduct property) (mici.matrices.OrthogonalMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.ScaledOrthogonalMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SquareMatrix property) (mici.matrices.SquareMatrixProduct property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) (mici.matrices.TriangularMatrix property) TerminationCriterion (in module mici.types) TraceFunction (in module mici.types) TractableFlowIntegrator (class in mici.integrators) TractableFlowSystem (class in mici.systems) Transition (class in mici.transitions) transitions (mici.samplers.DynamicMultinomialHMC property) (mici.samplers.DynamicSliceHMC property) (mici.samplers.HamiltonianMonteCarlo property) (mici.samplers.MarkovChainMonteCarloMethod property) (mici.samplers.RandomMetropolisHMC property) (mici.samplers.StaticMetropolisHMC property) TransitionStatistics (in module mici.types) transpose (mici.matrices.BlockColumnMatrix property) (mici.matrices.BlockMatrix property) (mici.matrices.BlockRowMatrix property) (mici.matrices.DenseDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteMatrix property) (mici.matrices.DensePositiveDefiniteProductMatrix property) (mici.matrices.DenseRectangularMatrix property) (mici.matrices.DenseSquareMatrix property) (mici.matrices.DenseSymmetricMatrix property) (mici.matrices.DiagonalMatrix property) (mici.matrices.DifferentiableMatrix property) (mici.matrices.EigendecomposedPositiveDefiniteMatrix property) (mici.matrices.EigendecomposedSymmetricMatrix property) (mici.matrices.ExplicitArrayMatrix property) (mici.matrices.IdentityMatrix property) (mici.matrices.ImplicitArrayMatrix property) (mici.matrices.InverseLUFactoredSquareMatrix property) (mici.matrices.InverseTriangularMatrix property) (mici.matrices.InvertibleMatrix property) (mici.matrices.InvertibleMatrixProduct property) (mici.matrices.Matrix property) (mici.matrices.MatrixProduct property) (mici.matrices.OrthogonalMatrix property) (mici.matrices.PositiveDefiniteBlockDiagonalMatrix property) (mici.matrices.PositiveDefiniteLowRankUpdateMatrix property) (mici.matrices.PositiveDefiniteMatrix property) (mici.matrices.PositiveDiagonalMatrix property) (mici.matrices.PositiveScaledIdentityMatrix property) (mici.matrices.ScaledIdentityMatrix property) (mici.matrices.ScaledOrthogonalMatrix property) (mici.matrices.SoftAbsRegularizedPositiveDefiniteMatrix property) (mici.matrices.SquareBlockDiagonalMatrix property) (mici.matrices.SquareLowRankUpdateMatrix property) (mici.matrices.SquareMatrix property) (mici.matrices.SquareMatrixProduct property) (mici.matrices.SymmetricBlockDiagonalMatrix property) (mici.matrices.SymmetricLowRankUpdateMatrix property) (mici.matrices.SymmetricMatrix property) (mici.matrices.TriangularFactoredDefiniteMatrix property) (mici.matrices.TriangularFactoredPositiveDefiniteMatrix property) (mici.matrices.TriangularMatrix property) TriangularFactoredDefiniteMatrix (class in mici.matrices) TriangularFactoredPositiveDefiniteMatrix (class in mici.matrices) TriangularMatrix (class in mici.matrices) U unstarted_labels (mici.progressbars.LabelledSequenceProgressBar property) update() (mici.adapters.Adapter method) (mici.adapters.DualAveragingStepSizeAdapter method) (mici.adapters.OnlineCovarianceMetricAdapter method) (mici.adapters.OnlineVarianceMetricAdapter method) (mici.progressbars.DummyProgressBar method) (mici.progressbars.FileDisplay method) (mici.progressbars.LabelledSequenceProgressBar method) (mici.progressbars.ProgressBar method) (mici.progressbars.SequenceProgressBar method) (mici.progressbars.UpdateableDisplay method) UpdateableDisplay (class in mici.progressbars) V val (mici.utils.LogRepFloat property) VectorJacobianProduct (in module mici.types) VectorJacobianProductFunction (in module mici.types) vjp_and_value() (in module mici.autodiff.autograd_wrapper) (in module mici.autodiff.jax_wrapper) (in module mici.autodiff.symnum_wrapper) vjp_metric_func() (mici.systems.CholeskyFactoredRiemannianMetricSystem method) (mici.systems.DenseRiemannianMetricSystem method) (mici.systems.DiagonalRiemannianMetricSystem method) (mici.systems.RiemannianMetricSystem method) (mici.systems.ScalarRiemannianMetricSystem method) (mici.systems.SoftAbsRiemannianMetricSystem method) W WarmUpStager (class in mici.stagers) WindowedWarmUpStager (class in mici.stagers) with_traceback() (mici.errors.AdaptationError method) (mici.errors.ConvergenceError method) (mici.errors.Error method) (mici.errors.HamiltonianDivergenceError method) (mici.errors.IntegratorError method) (mici.errors.LinAlgError method) (mici.errors.NonReversibleStepError method) (mici.errors.ReadOnlyStateError method) wrap_function() (in module mici.autodiff)
