mici package#
MCMC samplers based on simulating Hamiltonian dynamics on a manifold.
Subpackages#
Submodules#
- mici.adapters module
- mici.errors module
- mici.integrators module
- mici.interop module
- mici.matrices module
BlockColumnMatrixBlockMatrixBlockRowMatrixDenseDefiniteMatrixDensePositiveDefiniteMatrixDensePositiveDefiniteProductMatrixDenseRectangularMatrixDenseSquareMatrixDenseSymmetricMatrixDiagonalMatrixDifferentiableMatrixEigendecomposedPositiveDefiniteMatrixEigendecomposedSymmetricMatrixExplicitArrayMatrixIdentityMatrixImplicitArrayMatrixInverseLUFactoredSquareMatrixInverseTriangularMatrixInvertibleMatrixInvertibleMatrixProductMatrixMatrixProductOrthogonalMatrixPositiveDefiniteBlockDiagonalMatrixPositiveDefiniteLowRankUpdateMatrixPositiveDefiniteMatrixPositiveDiagonalMatrixPositiveScaledIdentityMatrixScaledIdentityMatrixScaledOrthogonalMatrixSoftAbsRegularizedPositiveDefiniteMatrixSquareBlockDiagonalMatrixSquareLowRankUpdateMatrixSquareMatrixSquareMatrixProductSymmetricBlockDiagonalMatrixSymmetricLowRankUpdateMatrixSymmetricMatrixTriangularFactoredDefiniteMatrixTriangularFactoredPositiveDefiniteMatrixTriangularMatrix
- mici.progressbars module
- mici.samplers module
- mici.solvers module
- mici.stagers module
- mici.states module
- mici.systems module
CholeskyFactoredRiemannianMetricSystemConstrainedEuclideanMetricSystemConstrainedTractableFlowSystemDenseConstrainedEuclideanMetricSystemDenseRiemannianMetricSystemDiagonalRiemannianMetricSystemEuclideanMetricSystemGaussianDenseConstrainedEuclideanMetricSystemGaussianEuclideanMetricSystemRiemannianMetricSystemScalarRiemannianMetricSystemSoftAbsRiemannianMetricSystemSystemTractableFlowSystem
- mici.transitions module
CorrelatedMomentumTransitionDynamicIntegrationTransitionIndependentMomentumTransitionIntegrationTransitionMetropolisIntegrationTransitionMetropolisRandomIntegrationTransitionMetropolisStaticIntegrationTransitionMomentumTransitionMultinomialDynamicIntegrationTransitionSliceDynamicIntegrationTransitionTransitioneuclidean_no_u_turn_criterion()riemannian_no_u_turn_criterion()
- mici.types module
AdaptationStatisticFunctionAdapterStateArrayFunctionGradientFunctionHessianFunctionJacobianFunctionMatrixHessianProductMatrixHessianProductFunctionMatrixLikeMatrixTressianProductMatrixTressianProductFunctionMetricLikePyTreeReducerFunctionScalarFunctionScalarLikeSystemStateMethodSystemStateWithAuxMethodTerminationCriterionTraceFunctionTransitionStatisticsVectorJacobianProductVectorJacobianProductFunction
- mici.utils module